Day I (Tuesday, September 17)

Day I (Tuesday, September 17)
08.00-08.45
Registration
(open throughout the entire Workshop)
08.45-09.15
Welcome message and official opening of the Workshop
chair: Antoni Różalski, Wiesława Rudnicka
Session I.
Molecular host-pathogen-environmental interactions
session dedicated to prof. Adam Jaworski
chair: Jarosław Dziadek, John Blaho
09.15-10.00
DNA STRUCTURE AND INSTABILITIES RELATED TO HUMAN GENOMIC
DISORDERS: WITH APPRECIATION AND ADMIRATION OF PROF. ADAM
JAWORSKI
ROBERT D. WELLS – Institute of Biosciences and Technology, Center for
Genome Research, Houston, Texas, USA
10.00-10.30
ENVIRONMENTAL EFFECTS ON GENOME INTEGRITY IN PROKARYOTES
RICHARD BOWATER – School of Biological Sciences, University of East Anglia,
Norwich, United Kingdom
10.30-11.00
ONCOAPOPTOSIS: HARNESSING CELLULAR ANTIMICROBIAL RESPONSES AS A
NOVEL MOLECULAR THERAPEUTIC FOR CANCER TREATMENT
JOHN BLAHO – The City College of New York, Center for Advanced
Technology, New York, USA
11.00-11.15
Coffee break
11.15-11.45
ANTI-ALLERGIC EFFECTS OF LACTOBACILLUS PLANTARUM L-137 ISOLATED
FROM A TRADITIONAL FERMENTED FOOD AND DEVELOPMENT OF ORAL
VACCINE WITH THE LACTOBACILLUS
YOSHIKATSU MUROOKA – Osaka University, Osaka, Japan
11.45-12.15
CRYSTALLOGRAPHIC STUDIES OF THE TYPE III SECRETION SYSTEM:
WATCHING AT ATOMIC RESOLUTION HOW PATHOGENIC GRAM-NEGATIVE
BACTERIA ATTACK AND SECRETE THEIR LETHAL LOAD INTO EUKARYOTIC
HOST CELLS
ZYGMUNT DEREWENDA – Department of Molecular Physiology and Biological
Physics, University of Virginia School of Medicine, Charlottesville, USA
12.15-12.30
Microbial Sequencing with the Ion PGMTM System
MARCO PIROTTA–Business Development Next-Generation Sequencing, Life
Technologies
12.30-14.00
Lunch
14.00-16.30
Oral presentations of Ph.D. Students of Institute of Medical Biology, Polish
Academy of Sciences
(supported by Project Operational Programme – Innovative Economy (OP IE)
01.01.02-10-107/09 “Studies of the molecular mechanisms at the interface
the human organism-the pathogen-environmental factors (InterMolMed)”)
14.00-14.15
PATHWAYS TO SYNTHESIS OF THE MALONYL-COA IN MYCOBACTERIUM
JAKUB PAWEŁCZYK, supervisor – Jarosław Dziadek
14.15-14.30
SELECTED INNATE IMMUNITY FACTORS IN PULMONARY TUBERCULOSIS
PATIENTS
ANNA SOKOŁOWSKA, supervisor – Maciej Cedzyński
14.30-14.45
THE INTERACTION OF COMPLEMENT-ACTIVATING LECTINS WITH
MYCOBACTERIUM TUBERCULOSIS AND ITS CELL FRACTIONS
MARCIN A. BARTŁOMIEJCZYK, supervisor – Anna Świerzko
14.45-15.00
MOLECULAR GENOTYPING OF HUMAN INTESTINAL E. COLI STRAINS
ANNA B. KUBIAK, supervisor – Paweł Parniewski
15.00-15.15
CONSEQUENCES OF TLR2 ACTIVATION IN MONOCYTE-MACROPHAGE
DIFFERENTIATION MODELS
IWONA SACHRAJDA, supervisor – Łukasz Pułaski
15.15-15.30
INFLUENCE OF ENZYMES DEGRADING CHOLESTEROL ON THE RESPONSE OF
HUMAN MACROPHAGES TO MYCOBACTERIUM TUBERCULOSIS INFECTION IN
VITRO
MARTA BRZEZIŃSKA, supervisor – Magdalena Klink
15.30-15.45
QUANTUM AND CLASSICAL MECHANICS METHODS IN COMPUTER-AIDED
DRUG DISCOVERY
MARCIN NOWOSIELSKI, supervisor – Marcin Hoffmann
15.45-16.00
EVALUATION OF PRIMASE DNAG OF MYCOBACTERIA AS A POTENTIAL
TARGET FOR ANTIBIOTICS
ANETA KUROŃ, supervisor – Jarosław Dziadek
16.00-16.15
PARTICIPATION OF MYCOBACTERIUM TUBERCULOSIS PROTEINS OF DNA
DOUBLE-STRAND BREAKS REPAIR SYSTEMS IN THE INFECTION OF HUMAN
MACROPHAGES WITH MTB, IN VITRO
IZABELA SZULC, supervisor – Magdalena Klink
16.15-16.30
TRS-BASED PCR AS A POTENTIAL TOOL FOR INTER-SEROVAR GENOTYPING
SALMONELLA ENTERITIDIS, TYPHIMURIUM, INFANTIS, VIRCHOW, HADAR,
NEWPORT AND ANATUM
ANNA KRZYŻANOWSKA, supervisor – Paweł Parniewski
16.30-16.45
Coffee break
16.45-18.00
Oral presentations of selected abstracts
chair: Paweł Stączek, Robert D. Wells
16.45-17.00
SENSITIZATION OF BREAST CANCER CELLS TO DNA DEMAGE AGENTS WITH
DNA-PK INHIBITOR
WOJCIECH M. CISZEWSKI – Nothern Institute of Cancer Research, Newcastle
University, Framlington Place, United Kingdom
17.00-17.15
THE FUNCTION OF RNASE H CLASS IS ESSENTIAL FOR SURVIVAL OF
MYCOBACTERIUM SMEGMATIS
ALINA MINIAS–Institute of Medical Biology, Polish Academy of Sciences, Lodz,
Poland
17.15-17.30
TOPOLOGY-DEPENDENT DnaA INTERACTIONS WITH HELICOBACTER PYLORI
ORIGIN OF CHROMOSOMAL REPLICATION
RAFAŁ DONCZEW – Institute of Immunology and Experimental Therapy, Polish
Academy of Sciences, Department of Microbiology, Wroclaw, Poland
17.30-17.45
THE ROLE OF TOPOISOMERASE I IN CHROMOSOME DYNAMICS OF
MYCOBACTERIUM SMEGMATIS
PATRYCJA SKUT – Department of Molecular Microbiology, Faculty of
Biotechnology, University of Wroclaw, Poland
17.45-18.00
A POTENTIAL REGULATORY SYSTEM OF STAPHYLOCOCCUS AUREUS
IMPLICATED IN RESPONSE TO DIFFERENT STRESS STIMULI
MICHAŁ BUKOWSKI – Department of Analytical Biochemistry, Faculty of
Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Cracow,
Poland
18.15-19.15
Poster session and coffee break
Day II (Wednesday, September 18)
Session II.
Microbial biotechnology for environmental protection and industry
chair: Jerzy Długoński, Leo de Graaff
08.30-09.00
MICROBIOLOGICAL MUTAGENICITY TESTS WITH THE USE OF GENETICALLY
MODIFIED STRAINS OF VIBRIO HARVEYI IN STUDIES ON MUTAGENIC
POLLUTION OF ENVIRONMENT
GRZEGORZ WĘGRZYN – Molecular Biology Department, University of Gdańsk,
Gdańsk, Poland
09.00-09.30
COMPATIBLE SOLUTES; THEN AND NOW
MILTON S. DA COSTA – Departamento de Ciências da Vida and Centro de
Neurociências e Biologia Celular, Universidade de Coimbra, Coimbra, Portugal
09.30-10.00
SUB-CELLULAR PROTEOMICS TO DISCOVER MECHANISMS IN MICROBIAL
PHYSIOLOGY
LEO DE GRAAFF – Microbial Systems Biology, Laboratory of Systems and
Synthetic Biology, Wageningen, University of Wageningen, Netherlands
10.00-10.15
Coffee break
10.15-10.45
SPECIES BIOTYPIZATION, WHY DE NOVO SEQUENCING ALWAYS WINS?
MARIO CINDRIĆ – Laboratory of System Biomedicine and Centre for
Proteomics and Mass Spectrometry, „Rudjer Boskovic“ Institute, Croatia
10.45-11.15
NON-RIBOSOMAL PEPTIDES PRODUCED BY THE BALTIC CYANOBACTERIA –
STRUCTURE AND ACTIVITY
HANNA MAZUR-MARZEC – Institute of Oceanography, University of Gdańsk,
Gdynia, Poland
11.15-11.45
MASS SPECTROMETRY FOR MICROBIAL GLYCOMICS
WOJCIECH JACHYMEK – Ludwik Hirszfeld Institute of Immunology and
Experimental Therapy, PAS, Wrocław, Poland
11.45-12.15
TUTORIAL LECTURE – Symbios
12.15-13.45
Lunch
13.45-15.15
Oral presentations of selected abstracts
chair: Hanna Mazur-Marzec, Yoshikatsu Murooka
13.45-14.00
MALDI-TOF/TOF ANALYSIS OF METARHIZIUM VELUTIUM PROTEOME
DURING 4-n-NONYLPHENOL BIODEGRADATION
RAFAŁ SZEWCZYK – Department of Biotechnology and Industrial Microbiology,
Institute of Microbiology, Biotechnology and Immunology, Faculty of Biology
and Environmental Protection, University of Lodz, Poland
14.00-14.15
BALTIC BACTERIA – EFFECTIVE DEGRADERS OF CYANOBACTERIAL
NONRIBOSOMAL PEPTIDES
ANNA TORUŃSKA – Laboratory of Biochemical Ecology and Microorganisms,
Institute of Oceanography, University of Gdańsk, Poland
14.15-14.30
HALOTOLERANT MICROORGANISMS ASSOCIATED WITH THE PLANTS IN
SALINE SOIL
SONIA SZYMAŃSKA – Department of Microbiology, Nicolaus Copernicus
University in Torun, Poland
14.30-14.45
GENETIC MODIFICATION OF GLYCEROL FERMENTATIVE CATABOLISM IN
WILD TYPE STRAIN C. FREUNDII AD970
KATARZYNA CZACZYK – Department of Biotechnology and Food Microbiology,
Poznan University of Life Sciences, Poznań, Poland
14.45-15.00
THE TORTUOUS TRIMETHYLAMINE DEGRADATION PATHWAYS IN TWO
STRAINS OF GENUS PARACOCCUS (ALPHAPROTEOBACTERIA)
KATARZYNA KUŹMICZ – Department of Bacterial Genetics, Institute of
Microbiology, Faculty of Biology, University of Warsaw, Poland
15.00-15.15
MOLECULAR METHODS FOR IDENTIFICATION OF BACTERIAL STRAINS
COLONIZATION OF HISTORIC BUILDINGS
ANNA OTLEWSKA – Institute of Fermentation Technology and Microbiology,
Lodz University of Technology, Poland
15.15-16.15
Poster session and coffee break
16.15-19.30
Mass Spectrometry and Proteomics in Microbial Study – sample analysis
20.00
Get-together party
Day III (Thursday, September 19)
Session III.
Innate and adaptive responses to microbes. The beneficial and harmful
aspects
chair: Marek Niemiałtowski, Leif Percival Andersen
09.00-09.30
ALTERATION OF THE INNATE IMMUNE SYSTEM AND SUSCEPTIBILITY TO
INFECTION DURING CHRONIC OBSTRUCTIVE PULMONARY DISEASE
PHILLIPE GOSSET – Institut Pasteur de Lille, France
09.30-10.00
ROLE OF THE BACTERIAL CELL WALL GLYCOCONJUGATES IN ELICITATION OR
SUPRESSION OF EUKARYOTIC INNATE IMMUNITY
ANTONIO MOLINARO – Department of Chemical Sciences, Università di Napoli
Federico II, Napoli, Italy
10.00-10.15 High Content Screening–novel imaging technology from Molecular Devices
SYNGEN BIOTECH
10.15-10.30
Coffee break
10.30-10.15
MICROBIAL CELL ACTIVATION AND INFLAMMATION TRIGGERING
JOËL PESTEL – Unité de Glycobiologie Structurale et Fonctionnelle, CNRS UMR
8576, IRF 147, Université Lille-Nord de France
10.15-11.45
ZEBRAFISH EMBRYOS AS A NEW BIOLOGICAL MODEL TO STUDY THE
PATHOPHYSIOLOGICAL EVENTS OF MYCOBACTERIUM ABSCESSUS INFECTION
LAURENT KREMER – Laboratoire de Dynamique des Interactions
Membranaires Normales et Pathologiques, Université de Montpellier 2, CNRS
UMR 5235, Montpellier, France
11.45-12.15
SEEING THROUGH HOST-PATHOGEN INTERACTIONS USING A ZEBRAFISH
EMBRYO INFECTION MODEL FOR BURKHOLDERIA CEPACIA COMPLEX
ANNETTE VERGUNST – INSERM U1047, Université de Montpellier 1, UFR
Médecine, Nîmes, France
12.15-12.45
L5P A SPECIFIC LIPOPEPTIDE OF MYCOBACTERIUM AVIUM SUBSP.
PARATUBERCULOSIS: FEATURE AND INNOVATIVE DIAGNOSIS APPLICATIONS
FRANCK BIET – INRA, UMR ISP 1282, Infectiologie et Santé Publique (ISP-311),
Centre Val de Loire F-37380 Nouzilly, France
12.45-14.00
Flow Cytometry Workshop – Becton Dickinson
14.00-15.30
Lunch
15.30-16.45
Oral presentations of selected abstracts
chair: Magdalena Chmiela, Phillipe Gosset
15.30-15.45
GALLERIA MELLONELLA HEMOLYMPH PEPTIDES – A NEW WEAPON AGAINST
LEGIONELLA BACTERIA
ELŻBIETA CHMIEL – Department of Genetics and Microbiology, Maria CurieSkłodowska University, Poland
15.45-16.00
PREPARATION OF GLYCOCONJUGATES HAVING OLIGOSACCHARIDE MOJETY
FROM BACTERIAL SOURCE
ALBERTO MARIA MARZAIOLI – Department of Chemical Sciences, Università di
Napoli Federico II, Napoli, Italy
16.00-16.15
IMMUNOPROTECTION AGAINST CHRONIC TOXOPLASMA GONDII INFECTION
INDUCED BY RECOMBINANT ANTIGENS OF THE PARASITE
JUSTYNA GATKOWSKA – Department of Immunoparasitology, Faculty of
Biology and Environmental Protection, University of Lodz, Poland
16.15-16.30
USE OF IL-2 PRESENTING BACILLUS SUBTILIS SPORES LEADS TO
DEVELOPMENT OF CELLULAR IMMUNE RESPONSE TO ORALLY
ADMINISTERED SPORE BAS VACCINE
IWONA PIĄTEK – Department of Medical Biotechnology, Intercollegiate
Faculty of Biotechnology UG-MUG, Poland
16.30-16.45
THE EFFECT OF CpG ODN AND EXYDIZED CHOLESTEROL ON THE INTEGRITY
AND IMMUNOMODULATORY PROPERTIES OF VASCULAR ENDOTHELIUM
MACIEJ CHAŁUBIŃSKI–Department of Internal Diseases and Clinical
Pharmacology, Medical University of Lodz, Poland
16.45-17.45
Poster session and coffee break
Day IV (Friday, September 20)
Session IV.
Microbial virulence factors in human, animal and plant infections
chair: Barbara Różalska, Antonio Molinaro
09.00-09.30
GRAM-NEGATIVE BACTERIA AND LPS - SOME ASPECTS OF 65 YEARS OF
RESEARCH
OTTO HOLST – Division of Structural Biochemistry, Research Center Borstel,
Germany
09.30-10.00
HOW TO TURN A BACTERIAL PATHOGEN INTO A PROBIOTIC-LIKE ORGANISM
CAMILLE LOCHT – Institut Pasteur de Lille, France
10.00-10.30
EMERGING GLOBAL LANDSCAPE OF THE HOST RANGE AND
GENETIC DIVERSITY OF HANTAVIRUSES
RICHARD YANAGIHARA – Pacific Center for Emerging Infectious Diseases
Research, John A. Burns School of Medicine, University of Hawaii at Manoa,
Honolulu, Hawaii, U.S.A.
10.30-11.00
PREVENTING NOSOCOMIAL WATER-BORNE INFECTION BY CONTROLLING
WATER AND WATER SYSTEMS
LEIF PERCIVAL ANDERSEN – Copenhagen University Hospital (Rigshospitalet),
Denmark
11.00-11.30
STRUCTURE, SEROLOGY, AND GENETICS OF PROVIDENCIA O-ANTIGENS
OLGA OVCHINNIKOWA – N. D. Zelinsky Institute of Organic Chemistry, Russian
Academy of Sciences, Russia
11.30-11.45
Coffee break
11.45-12.45
Oral presentations of selected abstracts
chair: Henryka Długońska, Otto Holst
11.45-12.00
CHEMISTRY AND IMMUNITY OF LPSs ISOLATED FROM CYSTIC FIBROSIS
PATHOGENS
FLAVIANA DI LORENZO – Department of Chemical Sciences, Università di
Napoli Federico II, Napoli, Italy
12.00-12.15
ACTIVITY AND PRELIMINARY IDENTIFICATION OF THE ANTIMYCOBACTERIAL
COMPOUND ISOLATED FROM METABOLITES OF THE EARTHWORM GUT
BACTERIUM RAOULTELLA ORNITHINOLYTICA
MARTA FIOŁKA – Department of Immunology, Institute of Biology and
Biochemistry, Maria Curie-Skłodowska University, Lublin, Poland
12.15-12.30
IS THE CONCENTRATION OF GLUCOSE AFFECTS THE QUANTITY AND
CHEMICAL STRUCTURE OF THE P. AERUGINOSA BIOFILM FORMED IN
PATIENTS WITH CHRONIC DIABETIC FOOT WOUNDS?
AGNIESZKA MACHUL – Department of Microbiology, Jagiellonian University
Medical College, Cracow, Poland
12.30-12.45
EFFECTS OF STRESS FACTORS ON EXTRACELLULAR POLYSACCHARIDES
SYNTHESIS IN PROTEUS MIRABILIS BIOFILM
MAGDALENA MORYL – Department of Immunology of Bacteria, University of
Lodz, Lodz, Poland
12.45-13.00
DERIVATIVES OF 5-ARYLIDENEIMIDAZOLONE – NEW TOOLS TO COMBAT
MDR BACTERIA
EWA OTRĘBSKA – Department of Technology and Biotechnology of Drugs,
Jagiellonian University Medical College, Cracow, Poland
13.00-13.15
TUTORIAL LECTURE – Mettler Toledo
13.15-14.30
Lunch
14.30-15.30
Poster session and coffee break
15.30-16.00
Closing remarks
The award ceremony for the best oral and poster presentation of MIKROBIOT 2013.
INVESTIN award for the project with commercial potential.