ŴƄţǀ źŤĩŚŝ ƶſ ƱŚƯżưƷ Ɔ ƽ ţ LjƳƺưƫŚſ ǀƠƾ ſŚŝ ſřźŤƳō ŽƺƬ ƹ

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ŴƄţǀ źŤĩŚŝ ƶſ ƱŚƯżưƷ Ɔ ƽ ţ LjƳƺưƫŚſ ǀƠƾ ſŚŝ ſřźŤƳō ŽƺƬ ƹ
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ŤƳŚſ
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ŢĩźºƃƶºŝĬƴǀƀƳŚĪſƽřźŝŚƷƱōƾŞƤƗƹ ƾƿƺƬū ƽŚƷźưƿřźě
ŶƿŵźĭƩŚſŹřƶƏƺŝźƯ
ŻřƪºƇŚůžƳŚĪºſƪƯŚƃ ƾŤƟŚƿŹŵ ƽŚƷƞ
ƿŵŹžƳŚĪſżǀƫŚƳō
ƮºƷŚºŝ ƾƳŚƃƺěƮƷƹŢƣŵźƔƳŻřƶƘƐƣźƷ RƹFƽŚƷźưƿřźě
ŵƺºŝŹŚƔŤƳřšŚƘƐƣƽƵŻřŶƳřƾƷŚţƺĩƶŝƶūƺţŚŝŶƿŵźĭ ƾſŹźŝ
ƾƿŚºſŚƴƃ ƽřźŝŶƃŚŝƶŤƃřŵŵƺūƹ ƾƳŚƃƺěƮƷ ƽŵŚƿŻŹřŶƤƯƶĩ
ŢĩźºƃŢųŚºſDNASIS VerÏÓ ƽƶƯŚƳźŝŻř
ƾƳŚƃƺěƮƷ
žƳŚĪºſ ƽŹŚŤºƃƺƳƪºƿŚƟƶĩƪĪƃƲƿŶŝŶƃƵŵŚƠŤſř ƾģŚŤǀƷ
RźºưƿřźěžƳŚĪºſReverse Complement ŚŝFźưƿřźě
ƹƪƈŤƯƮƷƶŝALIGNƶƯŚƳźŝŻřƵŵŚƠŤſřŚŝƹŶƿŵźĭƶƀƿŚƤƯ
ŶºƃƪºƇŚůƶºƘƐƣźºƷƽřźºŝƾƬºƇřžƳŚĪſƱōƂƿřźƿƹŚŝ
ĨºƳŚŝŚŝÎÓBLASTÏÏÖƽƶƯ
ŚƳźŝŚŝƪƇŚůƽŚƷžƳŚĪſ
ƶºƯŚƳźŝŻřŶƿŵźĭ ƾƿŚſŚƴƃŚƷšƹŚƤţƹŚƷŢƷŚŞƃƹƶƀƿŚƤƯƱĥ
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ŵŹřŶƳŚŤºſřƮŬůŹŵƂƴĩřƹƽŹřźƣźŝƎƿřźƃŚŝƹƝŶƷƽŚƷƱĥ
ÑƩƹŶºūŹŵũŹŶºƴƯšŚºŞǀĩźţƽƹŚºůƽŚºƷƶƫƺƫƶŝƵŶƃƶǀƸţ
ŹřźºƣƝŹƹŶºƴěřMaster CyclerƵŚĮŤºſŵŹŵƹƵŶºƃƶƟŚƋř
ƽƶºƬůźƯƪƯŚºƃƶĩŶƿŵźĭƭŚŬƳřPCRźƿŻƶƯŚƳźŝŚŝƹƶŤƟźĭ
ƪƯŚºƃƶºųźģÐÍžĜſƹÖÑƽŚƯŵŹŵƶƤǀƣŵÔƶųźģ Î Ʃƹř
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ÔƶºūŹŵÔÏŹŵƾƿŚºƸƳƽƶƬůźƯƹƶƤǀƣŵÎƶūŹŵÔϝƶƤǀƣŵÎ
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ěžĪƬěƾŤƫƺƯƭŚŬƳřŻřƪŞƣŢƟźĭšŹƺƇƶƤǀƣŵ
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ƯƱŵŹƹōŢſŵƶŝ
ƵŶºƃƶŤºƃƺƳÑƩƹŶºūŹŵƶºĩ ƾƳřżǀƯŹōƾ
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ě žĪƬě ƾŤƫƺƯ
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ŢºƿŚƸƳŹŵŶºƿŵźĭŻŹƺƟƹźŤĪƫřŢƫƹ ÎÍÍ ĥŚŤƫƹŚŝ TBE źƟŚŝ
ƭƺƿŶºǀţřĬºƳŹŚºŝŻŹŚºĭōƩĥźºƔƳŵŹƺºƯŶƳŚŝŢƿƹŹŹƺƔƴƯƶŝ
ƵŚĮŤºſŵƽƹŹźºŝƺƄºŤƀƃŻřžěƹŶƿŵźĭƽżǀƯōĬƳŹŶƿŚƯƹźŝ
ƂƴºĩřƹƶºĩŢºſřźºĩŷƶŝƭŻLJŶƿŵźĭ ƾſŹźŝƂƠƴŝ ƽřŹƹŚƯ
žĪƬĜǀŤƫŚºƯƮƷƹžĪƬĜǀƳƺƿšŹƺƇƶŝƮƷƽźŤĩŚŝƶſźƷƽřźŝ
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ÏÎƽƵŹƹŵƱŚŬƳŻƾƳŚƯŹŵƾŤƃřŶƸŝšŚƯŶųƹƾƨƃżěƭƺƬƗƵŚĮƄƳřŵƾƄƷƹĦěƾưƬƗƽ
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ŹƺƏƶŝžŶƷŵƾ
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ŵŹřŶƳŚŤſřƽŚƷƶƿƺſMultiplex PCRƹUniplex
ƶºĩŶºƴŤƟźĭŹřźƣPCRŵŹƺƯŶƳŶƃƵŵŚƠŤſřƾƠƴƯƩźŤƴĩƱřƺƴƗ
žºĪƬě ƾƳƺƿ ƪĪƃƶŝŚƷźưƿřźěƶĩŵřŵƱŚƄƳźưƿřźěŢƠū ÑŚŝ
ŢſŚƷźưƿřźěƲƿř
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ŹŵƭźĭƺƳŚºƳÔÒƩŵŚƘƯƾƯƺƳĥDNAŢƔƬƛƶĩŵƺưƳƆŴƄƯ
ƾºſŹźŝÏƪĪºƃŢºſřƵŵźĩŵŚŬƿř ÎÏÒ źưƿřźěŚŝžĩřźŤƳōƹ
ŢºƠūÒŚºŝƭƺºƳĥÎÍÑ ŢºƣŹŚºţƞƬŤŴƯ ƽŚƷŢƣŹŚŝ ƾſŹźŝ
ƽŚººƷƵŻřŶººƳřŚººŝŶººƳŚŝŹŚººƸģžººĪƬěƾŤƫƺººƯƹžººĪƬěƾƳƺº ƿ
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žǀŤƀºěŚǀƴǀºſźƿ SÎÏźưƿřźěŚŝ ƾƠǀţ LjƳƺưƫŚſ ÎÏÖźưƿřźěŚŝ
Î ƩŵŚƘƯƁƹŹŢǀſŚƀůƶŬǀŤƳŹŵŶƃŚŝƾ
Ư ƾĜĩ τÎÍÓ Ŷūřƹ
ƶºſźºƷŹōƾ
ºſƾ
ěžĪƬěƾŤƫƺƯÐƪĪƃMultiplex PCR
ŶºƃŚŝƾ
ºƯ ƽźŤĩŚºŝ ÎÍ Śºţ Î ƩŵŚºƘƯƁƹŹŢǀſŚƀºůƲƿřźŝŚƴŝ
ƶºĩŢºſřƶºŤƟźĭƭŚŬƳřPCRƾƇŚƈŤųřźưƿřźěŢƠūŪƴěŚŝ
ŚººŝƭƺººƿŹƺƯƾººƠǀţLjƳƺưƫŚººſƹžĩřźººŤƳōžǀŤƀººěŚǀƴǀººſźƿ
ƶºŝƶºĩŚǀƳƺƯƺƴěLjǀƀŞƬĩżƴƀſŹŚƯŚǀƃřźſƽŶƳƹźƟźŤĩŚŝƹźŤǀſ
ŚºƷƶƳƺưƳ
ƾſŹźŝƽƶŬ
ǀŤƳžŵƺƃƾ
ƯƵŶƿŵÎƪĪƃŹŵƶĩƱŚƴĤưƷ
ƱŵƺŝƾƇŚƈŤųřƽƵŶƴƷŵƱŚƄƳƲƿřƹŶƳŵźĪƳŵŚŬƿřƽŶƳŚŝŪǀƷ
ÎÍÕÐƹ ÒÏ͝ÑÕ֝ÎÓÑƽŚƷƵŻřŶƳřŚŝŶƳŚŝŹŚƸģžĪƬě ƾŤƫƺƯƹ
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ƪĪºƃƶºŝŚƷźưƿřźěƶĩƵŵřŵƱŚƄƳřŹźưƿřźěŢƠūÑ ŚŝŚƷƶƳƺưƳ
ŢǀſŚƀºůƶºĩŶºƷŵƾ
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.ŢººſřƵŵźººĩŵŚººŬƿřÎÏÒźººưƿřźěŚººŝžĩřźººŤƳōƹFźưƿřźěŚººŝ
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ƶºĩƽ
ŹƺƏƶŝŵřŵƱŚƄƳřŹźƔƳŵŹƺƯƽŚƷƽ
źŤĩŚŝŵŹřŶƳŚŤſřƶƿƺſ
ŶǀƿŚţřŹƶŬǀŤƳƲƿřżǀƳƾƴƬĩƁŹŚưƃƁƹŹƶŝŢǀſŚƀůƾſŹźŝ
ŢººſřƵŵřŵƱŚƄººƳřŹŹŚººƔŤƳřŵŹƺººƯšŚººƘƐƣƭŚººưţŹƺƌººů
ƶºƧΝϝÐƪĪºƃƶºŝƶūƺţŚŝPCR Ʊŵƺŝ ƾƇŚƈŤųř ƾſŹźŝ
ŵƺưƳ
żǀƳřŹŚƷźưƿřźěƹŹōƾ
ſƾ
ěžĪƬěƾŤƫƺƯƱŵƺŝƾƇŚƈŤųřŪƿŚŤƳ
ƢǀƤŰţƲƿřŹŵƵŵŚƠŤſřŵŹƺƯƾƠƴƯƩźŤƴĩƽŚƷƽźŤĩŚŝŢƀǀƫ
ÎƩƹŶū
ƮƀǀƳŚĭŹřƹźĪǀƯƭŚƳ
ƶƿƺſƵŹŚưƃ
ƶǀƸţƪŰƯ
Staphylococcus areus
Shigella sonnei
ATCC 25923
ATCC 9290
pasture Iran
Esherichia coli
ATCC 25922
Enterococcus faecalis
ATCC 29212
Pseudomonas aeruginosa
ATCC 27853
Citrebacter freundi
PTCC 1600
Serratia marcesens
PTCC 1111
Klebsiella pneumonia
ATCC 7881
ÖÏźǀţƹŵřŵźųÕÒƽƵŹŚưƃ
ÏÎƽƵŹƹŵƱŚŬƳŻƾƳŚƯŹŵƾŤƃřŶƸŝšŚƯŶųƹƾƨƃżěƭƺƬƗƵŚĮƄƳřŵƾƄƷƹĦěƾưƬƗƽ
ƶƬŬƯ
Źōƾſ
ƾěžĪƬěƾŤƫ
ƺƯƽŻřŶƳřƵřŹŚŝƱŚƯżưƷƆǀŴƄţ
98
ƢǀƤŰţƲƿřŹŵƵŶƃƵŵŚƠŤſřƽŚƷźưƿřźěšŚƈŴƄƯÏƩƹŶū
ƲǀŘţƹźě
ƩƺƈŰƯƵŻřŶƳř
ƭƹŻƺƯƹźĩŶǀưſLjěƱĥƵŚĮƿŚū
źưƿřźěƵŹŚưƃ
invA
ÐÔÐbp
ƭƹŻƺƯƹźĩ
LjƳƺưƫŚſSÎÏ-sÎÐ
PXOÎ
HindIIIžĩřźŤƳōÎÏÒÎÏÓ
ÑÕÖbp
hp
pA
ƭƹŻƺƯƹźĩ
ŢƿŚſŶūřƹÎÍÕÐ bp
ÎÓÑ bp
chr
ƭƹŻƺƯƹźĩ
ÒÏÍ bp
pla
SÎÏF:
LjƳƺưƫŚſT
žĩřźŤƳōÎÏÖ-ÎÐÍ
ŚǀƴǀſźƿYer
pPstÎ
ƢǀƤŰţƲƿřŹŵƵŶƃƵŵŚƠŤſřƽŚƷźưƿřźěžƳŚĪſÐƩƹŶū
gta ttg ttg att aat
SÎÐR:
ata tta
cgc acg
gag atc cg
gaa
aca cgt t
Salmonella TF:
tgt ccg ctg
Salmonella TR:
atc tca
ggc aaa ctc aca agg
Antherax ÎÏÒ:
tta atg
cga
Antherax ÎÏÓ:
Antherax ÎÏÖ:
Antherax ÎÐÍ:
Yersinea YerF:
gat caa
tct
gtc atc
ttg tct acg
g
at
ttg cga ccg tac ttg aa
ccc agg ggg
aac gat
tgg
gaa
aca
agc tcc
aac gat agc
tac
att tgg
act tgc agg cca gta tcg
tcc
ag
c
PCRžĪƬěƾŤƫƺƯŶƴƿřźƟŹŵƵŶƃƵŵŚƠŤſřšŚŞǀĩźţƹźƿŵŚƤƯÑƩƹŶū
ŹřŶƤƯ
ŵřƺƯ
ƞƿŵŹ
ƩƺƯƺĪǀěÎÔÓ
ƾƤƿŹżţźƐƤƯśō
Î
ƩƺƯƺĪǀěÎ
MgclÏmM ƩƺƯƺĪǀěÏÒ
ÎÍxźƟŚŝ
ƩƺƯƺĪǀěÍÒ
dNTPmix (ÎÍÍmM each)
ƩƺƯƺĪǀěÎ
Rźưƿřźě
ƩƺƯƺĪǀěÎ
ƩƺƯƺĪǀěÎ
ŢǀƳƺƿÏÒ
ƩƺƯƺĪǀěÏÒ
Fźưƿřźě
DNA
TaqƮƿżƳř Ɩưū
Ï
Ð
Ñ
Ò
Ó
Ô
Õ
Ö
ÖÏźǀţƹŵřŵźųÕÒƽƵŹŚưƃ
ÏÎƽƵŹƹŵƱŚŬƳŻƾƳŚƯŹŵƾŤƃřŶƸŝšŚƯŶųƹƾƨƃżěƭƺƬƗƵŚĮƄƳřŵƾƄƷƹĦěƾưƬƗƽ
ƶƬŬƯ
99
ƱřŹŚƨưƷƹƾƳŚƃƹźƟƽźƠƇžĭźƳ
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ƽƶƳŚų
ÒÏÍŶƳŚŝƵŻřŶƳřYerźưƿřźěŚŝžǀŤƀěŚǀƴǀſźƿÎƽƵŹŚưƃ
ƽƶƳŚų
Multiplex PCRƹUniplexŪƿŚŤƳÎƪĪƃ
ÎÏÖźưƿřźěŚŝžĩřźŤƳōÑƽƵŹŚưƃ
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ÎÏÖžĩřźŤƳōTLjƳƺưƫŚſÎÏÒžĩřźŤƳō
YerźºưƿřźěŚºŝžǀŤƀºěŚǀƴǀºſźƿÎƽƶºƳŚųŢºſřƵŵřŵƱŚƄºƳźºưƿřźěŢºƠūÑŚºŝřŹMultiplex PCRƹUniplexƽƶºŬǀŤƳÏƪĪƃ
LjƳƺưƫŚſÑƽƶƳŚų
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ÎÍÕÐŶƳŚŝƵŻřŶƳřÎÏÒźưƿřźěŚŝžĩřźŤƳōÏƽƶƳŚų
ÒÏÍŶƳŚŝƵŻřŶƳř
ŻřŢſřšŹŚŞƗƶĩƾƇŚƈŤųřźưƿřźěŢƠūŹŚƸģŚŝŹōƾſ
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ÐÔÐŶƳŚŝƵŻřŶƳřSÎÏźưƿřźěŚŝ
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ƶƬŬƯ
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ƾěžĪƬěƾŤƫƺƯ
ÎƽƶƳŚų
ŢſřƵŵřŵƱŚƄƳřŹƾƇŚƈŤųřźưƿřźěŢƠūŪƴěŚŝMultiplexPCRŪƿŚŤƳÐƪĪƃ
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ÎÍÕÐŶƳŚŝƽƵŻřŶƳř
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ƾƠǀţLjƳƺưƫŚſTźưƿřźěŢƠūŚŝDNAƩŚƿźſŢƣŹƶŝƍƺŝźƯŪƿŚŤƳÑƪĪƃ
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ÎÍ-ŢƣŹŚŝDNAÏƽƶƳŚų
ƆƫŚųƭƺƳĥƶƳƺưƳÎƽƶƳŚų
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ÎÍ-ÐŢƣŹŚŝDNA ÑƶƳŚųÎÍ-ÏŢƣŹŚŝDNAÐƽƶƳŚų
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ÎÍ-ÎŢƣŹŚŝDNAÐƽƶƳŚų
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źưƿřźěŚŝžĩřźŤƳōMultiplex PCRƂƴĩřƹƩƺƈŰƯŶǀƿŚţ
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ƶƬŬƯ
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šƹŚºƠŤƯƽŚºƷƵŵřƺƳŚºųŻřƞƬŤŴƯƶƳƺĭƶſźǀųřƢǀƤŰţƁƹŹ
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ŹƺºƏƶºŝšƹŚºƠŤƯƾƴǀƫŚºŝƹ ƽźƷŚºƓ ƽŚºƷšƹŚºƠţŚŝŚƷƽ
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ƽŚºƷźưƿřźě ƾºƠǀţLjƳƺưƫŚſ ƾƫƺĪƫƺƯƆǀŴƄţŢƸūƲǀƤƤŰƯ
ƽŚƷŶºǀţƺŘƬĩƺƳŶºƃŚŝƾºƯƖºūźƯƱĥžƳŚĪºſƾƳŚŤŰţƽƶŤƃŹ
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ÎÔŢƟźĭŹřźƣ ƾƿŚſŚƴƃŵŹƺƯƂƿŚƯŻōƶƫƺƫĨƿ ŹŵƱŚƯżưƷ
tyv,flic-ƵŶºƃƶŤųŚƴºƃ ƽŚºƷƱĥƞºƿŵŹŽŚſřźŝ ƾƠƬŤŴƯ
ƶºĩŢºſřƲºƿřźºƋŚůƢºǀƤŰţŚºŝƢºǀƤŰţƲºƿřšƹŚƠţÎÕ
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ŚºƸƴţ ƵŵŚƠŤºſřŵŹƺºƯ ƽŚºƷƱĥƹŢºſřźţŹřƺºƃŵ ŹŚĩƹŶƴŤƀƷ
ƾƴǀƫŚºŝƽŚºƷƶºƳƺưƳŻřŶºƿŚŝŚºưŤůƶĩŶƳŵƺŝžƳLJƹźƿƹƽŚƷƱĥ
ƹ PCR ƩƺƈºŰƯŻřƪºƇŚůžƳŚĪſƾƳŚƣƺƟƶŤƃźƳĥĨƳŚŝŻř
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ƵŶºƃƮƌºƷƩƺƈºŰƯÑƽƶƳŚųHindIII ƮƿżƳōƎſƺţƵŶƃ
HindIIIƮƿżƳōƎſƺţ
ƽŹŚưǀŝƆǀŴƄţƽřźŝžƳLJƹźƿƹźǀƛƮƷƹžƳLJƹźƿƹƽŚƷƱĥ
ŦŰŝ
ƶºĩŶºƃƵŵŚƠŤºſřŵŹřŶƳŚŤºſř ƽŚºƷƶƳƺưƳŻř ƾſŹźŝƲƿřŹŵ
ƁƹŹŚººŝƹviaB,fliC,tyv(rfbE), prt(rfbS)ƽŚººƷƱĥ
ƮǀƤŤƀƯƽƶƳƺưƳƲ
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ƲǀºƗŹŵƹƵŵƺºŝŵŚƿŻƁƹŹƲƿř ƽŚƷźưƿřźěŵřŶƘţÎÖŢſř
ŵƺūƹƾĪǀƴǀƬĩƽƶƳƺưƳŹŵŢſřƲĪưƯƶĩƽźĮƿŵ ƽŚƷƽ
źŤĩŚŝ
ƪºƯŚƗƆǀŴƄºţŢºƸūżºǀƳ ƾºƠƬŤŴƯŹŚǀƀŝ ƽŚƷƁƹŹ
Ţſř
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ŶºƴƯŻŚǀƳƆǀŴƄºţŢºƸūŵƺºūƺƯŵŹřŶƳŚŤſř ƽŚƷƁƹŹ
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ŶƇŹŵÎÒŚţ Î ŢƔƬƛŚŝŻŹƺƟźŤĪƫřƩĥŻŹŚĭō ƽŵŚƗƮŤƀǀſŚŝ
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ƯƽźŤĩŚŝƲƿř
Ɩƿźºſ PCRƽŚºƷƶųźģƭŚŬƳřƂƴĩřƹƍƺƬŴƯ ƽƶǀƸţƭƺƳĥ
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ƩƹřŶºŤƯŢƗźºſŚŝ ƽŵŚƗ PCR ƵŶƃƶŤƟźĭŹŚĩƶŝƁƹŹƩŚů
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Simultaneous Detection of Salmonella typhi, Bacillus antheracis, and Yersinea pestis by
Multiplex PCR
Safari Foroshani N1, Karami A2, Pourali F2, Aeidi A1, Fatemeh tavana BS2
1
Islamic Azad University, Science and Research, Tehran, Iran.
2
Research Center of Molecular Biology, Baqiyatallah University of Medical Sciences,Tehran, Iran
Corresponding Author: Karami A, Research Center of Molecular Biology, Baqiyatallah University of Medical
Sciences, Tehran, Iran.
Email: [email protected].
Received: 3 Oct 2012
Accepted: 17 Feb 2013
Background and Objectives: Salmonella typhi, Bacillus anthracis, and Yersinia pestis are potent human
pathogenic bacteria that cause typhoid fever, anthrax, and plague,respectively. The classic microbiological
methods for detection and identification of these agents are laborious and time consuming.Therefore,
developing an accurate method for rapid detection of these potent human pathogens is important, especially
due to their potential use as Bioterrorism agents. We have designed a new rapid molecular detection
method by using multiplex PCR in a single reaction.
Materials and Methods: PCR was carried out using specific primers for the virulence factor of S. typhi, hp
and invA, B. anthracis virulence factors, chr and pa, and Y. pestis toxin, pla. The primer sets were tested for
cross reactivity with individual DNA strains and mixtures in a multiplex PCR format. For determination of
sensitivity of the method, we used colony counting and genomic DNA dilution.
Results: Theresult with standard strains revealed that primers are specific for each strain as they have
successfully amplified the desire products. The sensitivity analysis showed a 1-10 CFU and 1-10 copies of
the genomes. In this respect, the accuracy of the result was checked by sequencing of the 1083-bp PCR
products, except for anthrax, which was determined by enzymatic digestion.
Conclusion: We have found a rapid, specific, sensitive, and a non-expensive molecular method for
detection of three potent human pathogens. This finding provide an efficient diagnostic tool to determine
these bacteria in bioterrorism samples.
Keywords: Detection, Salmonella typhi, Bacillus antheracis, Yersinia pestis, Multiplex PCR
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